Webb28 juli 2024 · plotSmear: R Documentation: Smear plot Description. Make a mean-difference plot of two libraries of count data with smearing of points with very low … Webb16 jan. 2024 · To represent counts that were low (e.g. zero in 1 library and non-zero in the other) in one of the two conditions, a 'smear' of points at low A value is presented.
[BioC] edgeR- plotSmear
Webb2 sep. 2024 · As a final step, we will produce a MA plot of the libraries of count data using the plotSmear function. There are smearing points with very low counts, particularly those counts that are zero for one of the columns. The resulting plot is saved to the plotMAResults jpg file in your working directory. Webb28 juli 2024 · plotSmear: R Documentation: Smear plot Description. Make a mean-difference plot of two libraries of count data with smearing of points with very low counts, especially those that are zero for one of the columns. potentate\\u0027s bw
edgeR: Empirical Analysis of Digital Gene Expression Data in R
WebbplotSmear is a more sophisticated and superior way to produce an 'MA plot'. plotSmear resolves the problem of plotting genes that have a total count of zero for one of the … Webb1 sep. 2024 · Before proceeding with plotting and exact tests we will need to import the edgeR library. #Load the edgeR library library ("edgeR") Next, we retrieve the input path for our raw gene counts and the column range for the exact test. The number of input arguments to the script are verified to help ensure that the required data is input to the … potentate\\u0027s ow