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Fish lncrna database

WebDec 31, 2024 · The data source for CRlncRNA. An overview of CRlncRNA framework was shown in Fig. 1.First, we used ‘lncRNA’, ‘lincRNA’, ‘long noncoding RNA’ and ‘cancer’ as keywords to search PubMed database [].Then, the abstract and the full text of selected articles were manually screened to extract cancer-related lncRNAs and their detailed … WebLNCipedia is a public database for long non-coding RNA (lncRNA) sequence and annotation. The current release contains 127,802 transcripts and 56,946 genes. Literature. Currently, LNCipedia offers 2,482 manually curated lncRNA articles. Recently added literature. Tools. LNCipidia comes with some helpful tools: ...

Long non-coding RNAs in the physiology of …

WebIntroduction. LncExpDB is a comprehensive database for lncRNA expression. It covers expression profiles of lncRNA genes across various biological contexts, predicts potential functional lncRNAs and their interacting partners, and thus provides essential guidance on experimental design.. LncExpDB currently houses expression profiles of 101,293 high … WebIntroduction. LncExpDB is a comprehensive database for lncRNA expression. It covers expression profiles of lncRNA genes across various biological contexts, predicts … dale of norway 140th anniversary sweater https://fok-drink.com

ncRNA Free Full-Text The lncRNA Toolkit: Databases and In

WebJan 8, 2024 · LncRNADisease 2.0 documents more than 200 000 lncRNA-disease associations. We expect that this database will continue to serve as a valuable source for potential clinical application related to lncRNAs. LncRNADisease 2.0 is freely available at http://www.rnanut.net/lncrnadisease/. Publication types Research Support, Non-U.S. … FishDB offers web services including a search tool, BLAST, JBrowse, and PrimerServer. The gene information for noncoding RNA (ncRNA), microRNA (miRNA), UTRs, and CDSs was collected and stored in the FishDB database (Fig. 1). See more The search module enables the user to collect interesting information, such as sequences, from genomes, transcriptomes, … See more The JBrowse module enables users to visualize the 88 fish genomes [17], which is a related browser to the conventional CGI-based genome … See more The blast module performs sequence similarity search employing a web-based BLAST server [16]. Users can use nucleotide BLAST … See more The PrimerServer module helps users design primers that are particular to polymerase chain reaction experiments (PCR). We used Primer3 [18] to produce candidate primer … See more WebWe also identified all the differentially expressed target genes from the microarray and RNA-seq data after knocking down or overexpressing a lncRNA. Currently, users can. • Obtain the target genes regulated by a lncRNA by searching the lncRNA gene ID or symbol. • Obtain the regulatory lncRNAs of a specific target gene by searching the ... biowestin

List of lncRNA databases. Download Table - ResearchGate

Category:A novel lncRNA–protein interaction prediction method based

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Fish lncrna database

FishDB: an integrated functional genomics database for …

WebJan 1, 2024 · 2 State Key Laboratory of Developmental Biology of Freshwater Fish, School of Life Sciences, Hunan Normal University, Changsha, China. PMID ... we constructed … WebNov 2, 2024 · The classification of lncRNAs. The six types of lncRNAs include sense lncRNAs A, orange, antisense lncRNAs (aslncRNAs) B, yellow, bidirectional lncRNAs C, light green, enhancer lncRNAs …

Fish lncrna database

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WebNov 16, 2024 · In this update of NONCODE database, we collected high-confidence datasets of plant lncRNA and developed a pipeline to annotate lncRNAs in plants. The …

WebJan 8, 2024 · Therefore, we developed a human lncRNA sets database, called LncSEA, which aimed to document a large number of available resources for human lncRNA sets and provide annotation and enrichment analyses for lncRNAs. LncSEA supports >40 000 lncRNA reference sets across 18 categories and 66 sub-categories, and covers over 50 … WebSearch for your lncRNAs of interest and press GO to obtain the plots. You can select at least 3 genes in both the search and reference inputs. If 3 are selected a high resolution screen is recommended. What is being displayed? LncATLAS displays the subcellular localisation for user-selected lncRNAs.

WebOct 2, 2024 · This database will provide for a systematic S. scrofalncRNA classification and help investigators browse, search for and analyze lncRNAs as well as do blastsearches among human, mouse and pig lncRNAs. Thus, lncRNAnet should improve the understanding of the biological functions of lncRNA. The database is freely accessible … WebStellaris FISH (fluorescence in situ hybridisation) is a RNA visualisation method that allows simultaneous detection, localization, and quantification of individual RNA molecules at …

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WebDec 16, 2024 · Consistent updating is crucial for a lncRNA database, as multitudes of novel lncRNA transcripts are identified each year. LNCipedia offers a well-designed and intuitive web-based interface, with the option to download the database for offline accession. ... or RNA fluorescence in situ hybridization (RNA-FISH) . 6. Structural Conformation. dale of norway christiania jacketWeb16 rows · Cancer LncRNA Census (CLC) Database of long-noncoding RNAs causally implicated in cancer through in vivo, in vitro and other evidence. BIGTranscriptome: High … biowest memWebSep 11, 2024 · This research will enrich the lncRNA database of teleost and contribute to a better understanding of the role of lncRNAs in the immune response of teleost. ... (3 biological duplicates at 5 time points) were used for later lncRNA-sequencing. The experimental fish were anesthetized with MS 222 at 100 mg/L before dissection. All … biowest l0931-100WebOct 5, 2024 · Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of... biowest lymphosepWebJan 16, 2024 · Non-alcoholic fatty liver disease (NAFLD) is one of the most prevalent chronic liver diseases worldwide with an unclear mechanism. Long non-coding RNAs (lncRNAs) have recently emerged as important regulatory molecules. To better understand NAFLD pathogenesis, lncRNA and messenger RNA (mRNA) microarrays were conducted in an … biowest idahoWebStellaris FISH (fluorescence in situ hybridization) is an RNA visualisation method that allows simultaneous detection, localisation and quantification of individual RNA molecules, including long non-coding RNA (lncRNA), at … dale of norway dystingen hatWeb1 day ago · The IBD-associated lncRNA Carinh protects against DSS-induced colitis. The C5orf56 locus, spanning 65.1 kb on human chromosome 5, and its ortholog Gm12216, spanning 73.7 kb on mouse chromosome 11 ... bio westhof